Windows graphical user interface tool for viewing LC-MS data and identifications. Software Category: Data Analysis and Data Presentation ToolsĪctive Data Canvas is a web-based visual analytic tool to visualize data matrix (expression matrix) and for users to interactively identify the structured domain knowledges (e.g., pathways and other genesets) linked to a cluster.Īctive Data Canvas was hosted at, but that was turned off due to lack of use. VIPER (Visual Inspection of Peak/Elution Relationships) can be used to visualize and characterize the features detected during LC-MS analyses. InfernoRDN can perform various downstream data analysis, data reduction, and data comparison tasks including normalization, hypothesis testing, clustering, and heatmap generation.Īligns multiple LC-MS datasets to one another after which LC-MS features can be matched to a database of peptides (typically an AMT tag database) This information is used to subtract out errors from parent ion protonated masses. Reduces mass measurement errors for parent ions of tandem MS/MS data by modeling systematic errors based on putative peptide identifications. Used to de-isotope mass spectra and to detect features from mass spectrometry data using observed isotopic signatures. All of our open source software is posted at our group’s GitHub Repository.
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